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When a deployment runs, the execution environment needs access to the flow code. Flow code is not stored directly in Prefect server or Prefect Cloud; instead, it must be made available to the execution environment. There are two main ways to achieve this:
  1. Include source code directly in your runtime: Often, this means building your code into a Docker image.
  2. Retrieve code from storage at runtime: The worker pulls code from a specified location before starting the flow run.
This page focuses on the second approach: retrieving code from a storage location at runtime. You have several options for where your code can be stored and pulled from:
  • Local filesystem
  • Git-based storage (GitHub, GitLab, Bitbucket)
  • Blob storage (AWS S3, Azure Blob Storage, GCP GCS)
The ideal choice depends on your team’s needs and tools. In the examples below, we show how to create a deployment configured to run on dynamic infrastructure for each of these storage options.

Deployment creation options

As detailed in the Deployment overview, you can create a deployment in one of two main ways:
  • Python code with the flow.deploy method
    • When using .deploy, specify a storage location for your flow with the flow.from_source method.
    • The source is either a URL to a git repository or a storage object. For example:
      • A local directory: source=Path(__file__).parent or source="/path/to/file"
      • A URL to a git repository: source="https://github.com/org/my-repo.git"
      • A storage object: source=GitRepository(url="https://github.com/org/my-repo.git")
    • The entrypoint is either the path to the file and the function name separated by a colon (for example, my_flow.py:my_func), or a Python module path (for example, my_module.my_flow.my_func).
  • YAML specification defined in a prefect.yaml file
    • To create a prefect.yaml file interactively, run prefect deploy from the CLI and follow the prompts.
    • The prefect.yaml file may define a pull section that specifies the storage location for your flow. For example:
      • Set the working directory:
      pull:
          - prefect.deployments.steps.set_working_directory:
              directory: /path/to/directory
      
      • Clone a git repository:
      pull:
          - prefect.deployments.steps.git_clone:
              repository: https://github.com/org/my-repo.git
      
      • Pull from blob storage:
      pull:
          - prefect.deployments.steps.pull_from_blob_storage:
              container: my-container
              folder: my-folder
      
Whether you use from_source or prefect.yaml to specify the storage location for your flow code, the resulting deployment will have a set of pull steps that your worker will use to retrieve the flow code at runtime.

Store code locally

If using a Process work pool, you can use one of the remote code storage options shown above, or you can store your flow code in a local folder. Here is an example of how to create a deployment with flow code stored locally:
from prefect import flow
from pathlib import Path


@flow(log_prints=True)
def my_flow(name: str = "World"):
    print(f"Hello {name}!")


if __name__ == "__main__":
    my_flow.from_source(
        source=str(Path(__file__).parent),  # code stored in local directory
        entrypoint="local_process_deploy_local_code.py:my_flow",
    ).deploy(
        name="local-process-deploy-local-code",
        work_pool_name="my-process-pool",
    )

Git-based storage

Git-based version control platforms provide redundancy, version control, and collaboration capabilities. Prefect supports: For a public repository, you can use the repository URL directly. If you are using a private repository and are authenticated in your environment at deployment creation and deployment execution, you can use the repository URL directly. Alternatively, for a private repository, you can create a Secret block or git-platform-specific credentials block to store your credentials: Then you can reference this block in the Python deploy method or the prefect.yaml file pull step. If using the Python deploy method with a private repository that references a block, provide a GitRepository object instead of a URL, as shown below.
from prefect import flow

if __name__ == "__main__":
    flow.from_source(
        source="https://github.com/org/my-public-repo.git",
        entrypoint="gh_public_repo.py:my_flow",
    ).deploy(
        name="my-github-deployment",
        work_pool_name="my_pool",
    )
For accessing a private repository, we suggest creating a Personal Access Tokens (PATs). We recommend using HTTPS with fine-grained Personal Access Tokens to limit access by repository.
Personal Access Token PermissionsWhen using a fine-grained token, ensure to add permissions to the token prior to saving. Per least privilege, we recommend granting the token the ability to read Contents and Metadata for your repository.
If using a Secret block, you can create it through code or the UI ahead of time and reference it at deployment creation as shown above.If using a GitHubCredentials block to store your credentials, you can create it ahead of time and reference it at deployment creation.
  1. Install prefect-github with pip install -U prefect-github
  2. Register all block types defined in prefect-github with prefect block register -m prefect_github
  3. Create a GitHubCredentials block through code or the Prefect UI and reference it at deployment creation as shown above.
Note that you can specify a branch if creating a GitRepository object. The default is "main".
Push your codeWhen you make a change to your code, Prefect does not push your code to your git-based version control platform. This is intentional to avoid confusion about the git history and push process.

Prefect Cloud GitHub App integration

If you use Prefect Cloud, you can install the Prefect Cloud GitHub App to authenticate to GitHub at runtime and pull private repository code without storing long-lived credentials. This approach is recommended for GitHub.com organizations that enforce SAML/SSO (GitHub Enterprise Cloud), because it removes the need for Personal Access Tokens (PATs) that must be individually authorized for SAML. Instead, an organization owner installs the GitHub App once, and every deployment in the organization can pull code through it.
This integration works with GitHub.com and GitHub Enterprise Cloud. It is not compatible with GitHub Enterprise Server (self-hosted) installations.

How it works

The Prefect Cloud GitHub App uses GitHub’s app installation token mechanism:
  1. An organization owner installs the app and grants it access to selected repositories.
  2. At deployment runtime, the worker calls prefect-cloud github token to request a short-lived installation access token from Prefect Cloud.
  3. Prefect Cloud exchanges its credentials with GitHub to generate the token, scoped only to the repositories the app can access.
  4. The worker uses this token to clone the repository, then the token expires.
Because the GitHub App is authorized at the organization level, it inherits SAML/SSO authorization automatically. Individual users do not need to authorize tokens through your identity provider.

Security details for InfoSec review

PropertyDetail
Token typeGitHub App installation access token
Token lifetimeShort-lived (expires within one hour)
Token scopeRead-only access to repository contents, limited to repositories selected during app installation
Credential storageNo customer credentials or long-lived tokens are stored in your deployment configuration. Prefect Cloud holds the GitHub App’s private key to mint installation tokens on your behalf.
SAML/SSO compatibilityThe GitHub App is authorized at the organization level, bypassing the per-user SAML token authorization requirement
RevocationAn organization owner can uninstall the app or change repository access at any time from GitHub App settings

Set up the GitHub App

1

Install the GitHub App

Navigate to the Prefect Cloud GitHub App installation page and select the GitHub organization and repositories you want to grant access to.If your organization enforces SAML/SSO, an organization owner must approve the app installation. The app is then authorized for SAML access automatically.
2

Configure your deployment

Add the following pull steps to your prefect.yaml file. Replace owner/repository with your repository’s full name:
prefect.yaml
pull:
    - prefect.deployments.steps.run_shell_script:
        id: get-github-token
        script: uv tool run prefect-cloud github token owner/repository
        stream_output: false
    - prefect.deployments.steps.git_clone:
        id: git-clone
        repository: https://x-access-token:{{ get-github-token.stdout }}@github.com/owner/repository.git
The prefect-cloud github token command requires that the worker’s environment is authenticated to Prefect Cloud. Ensure that PREFECT_API_KEY and PREFECT_API_URL are set in the worker’s environment, or that the worker is logged in through prefect cloud login.
For organizations that require PAT-based access instead, see the GitHub tab earlier on this page. If you use SSO more broadly with Prefect Cloud, see Configure single sign-on.

Docker-based storage

Another popular flow code storage option is to include it in a Docker image. All work pool options except Process and Prefect Managed allow you to bake your code into a Docker image. To create a deployment with Docker-based flow code storage use the Python deploy method or create a prefect.yaml file.
If you use the Python deploy method to store the flow code in a Docker image, you don’t need to use the from_source method.
The prefect.yaml file below was generated by running prefect deploy from the CLI (a few lines of metadata were excluded from the top of the file output for brevity). Note that the build section is necessary if baking your flow code into a Docker image.
from prefect import flow


@flow
def my_flow():
    print("Hello from inside a Docker container!")

if __name__ == "__main__":
    my_flow.deploy(
        name="my-docker-deploy",
        work_pool_name="my_pool",
        image="my-docker-image:latest",
        push=False
    )
By default, .deploy will build a Docker image that includes your flow code and any pip packages specified in a requirements.txt file. In the examples above, we elected not to push the resulting image to a remote registry. To push the image to a remote registry, pass push=True in the Python deploy method or add a push_docker_image step to the push section of the prefect.yaml file.

Custom Docker image

If an image is not specified by one of the methods above, deployment flow runs associated with a Docker work pool will use the base Prefect image (e.g. prefecthq/prefect:3-latest) when executing. Alternatively, you can create a custom Docker image outside of Prefect by running docker build && docker push elsewhere (e.g. in your CI/CD pipeline) and then reference the resulting image in the job_variables section of your deployment definition, or set the image as a default directly on the work pool. For more information, see this discussion of custom Docker images.

Blob storage

Another option for flow code storage is any fsspec-supported storage location, such as AWS S3, Azure Blob Storage, or GCP GCS. If the storage location is publicly available, or if you are authenticated in the environment where you are creating and running your deployment, you can reference the storage location directly. You don’t need to pass credentials explicitly. To pass credentials explicitly to authenticate to your storage location, you can use either of the following block types:
  • Prefect integration library storage blocks, such as the prefect-aws library’s S3Bucket block, which can use a AWSCredentials block when it is created.
  • Secret blocks
If you use a storage block such as the S3Bucket block, you need to have the prefect-aws library available in the environment where your flow code runs.You can do any of the following to make the library available:
  1. Install the library into the execution environment directly
  2. Specify the library in the work pool’s Base Job Template in the Environment Variables section like this:{"EXTRA_PIP_PACKAGES":"prefect-aws"}
  3. Specify the library in the environment variables of the deploy method as shown in the examples below
  4. Specify the library in a requirements.txt file and reference the file in the pull step of the prefect.yaml file like this:
    - prefect.deployments.steps.pip_install_requirements:
        directory: "{{ pull_code.directory }}" 
        requirements_file: requirements.txt
The examples below show how to create a deployment with flow code in a cloud provider storage location. For each example, we show how to access code that is publicly available. The prefect.yaml example includes an additional line to reference a credentials block if authenticating to a private storage location through that option. We also include Python code that shows how to use an existing storage block and an example of that creates, but doesn’t save, a storage block that references an existing nested credentials block.
from prefect import flow


if __name__ == "__main__":
    flow.from_source(
        source="s3://my-bucket/my-folder",
        entrypoint="my_file.py:my_flow",
    ).deploy(
        name="my-aws-s3-deployment",
        work_pool_name="my-work-pool"
    )
To create an AwsCredentials block:
  1. Install the prefect-aws library with pip install -U prefect-aws
  2. Register the blocks in prefect-aws with prefect block register -m prefect_aws
  3. Create a user with a role with read and write permissions to access the bucket. If using the UI, create an access key pair with IAM -> Users -> Security credentials -> Access keys -> Create access key. Choose Use case -> Other and then copy the Access key and Secret access key values.
  4. Create an AWSCredentials block in code or the Prefect UI. In addition to the block name, most users will fill in the AWS Access Key ID and AWS Access Key Secret fields.
  5. Reference the block as shown above.
Another authentication option is to give the worker access to the storage location at runtime through SSH keys.